C:\PLGS3.0.3\lib\apex3d\Apex3D64.exe -pRawDirName E:\TempRawData\filename.raw -outputDirName E:\TempRawData\filename.raw -outputUserDirName E:\TempRawData\filename.raw -lockMassZ2 785.8426 -lockmassToleranceAMU 0.25 -writeBinary 0 -bCSVOutput 1 -leThresholdCounts 1500 -startingRTMin 20 -endingRTMin 25 -function 1

pause